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#1779
Have you tried to install it again? Can you see in the logs where it failed?
#1782
Yeah, I tried to install the update from Yosemite to El Capitan couple of times but still failed. I also tried to install the update on El Capitan itself but also failed.

Can you teach me how to check the log?
#1784
When the install fails navigate to the Menu Bar and open Window and choose Log. From there change it to show all logs rather than just errors.
#1803
Code: Select all
May 10 22:42:38 TonydeMac-Pro Installer[855]: LSExceptions [0x7f923bc1fd70] loaded
May 10 22:42:38 TonydeMac-Pro Installer[855]: @(#)PROGRAM:Install  PROJECT:Install-1000
May 10 22:42:38 TonydeMac-Pro Installer[855]: @(#)PROGRAM:Installer  PROJECT:Installer-853
May 10 22:42:38 TonydeMac-Pro Installer[855]: Hardware: MacPro3,1 @ 3.30 GHz (x 6), 16384 MB RAM
May 10 22:42:38 TonydeMac-Pro Installer[855]: Running OS Build: Mac OS X 10.11 (15A284)
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: __CF_USER_TEXT_ENCODING=0x1F5:0x2:0x35
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: TMPDIR=/var/folders/w7/m6yj9tk55656gg_tdln8_2nh0000gn/T/
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: HOME=/Users/Hackintosh
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: SHELL=/bin/bash
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.h1o0c0PfLW/Listeners
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.C8463brOFG/Render
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: PATH=/usr/bin:/bin:/usr/sbin:/sbin
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: LOGNAME=Hackintosh
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: XPC_SERVICE_NAME=com.apple.xpc.launchd.oneshot.0x10000008.Installer
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: COMMAND_MODE=unix2003
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: USER=Hackintosh
May 10 22:42:38 TonydeMac-Pro Installer[855]: Env: XPC_FLAGS=0x0
May 10 22:42:38 TonydeMac-Pro Installer[855]: OS X El Capitan 更新  Installation Log
May 10 22:42:38 TonydeMac-Pro Installer[855]: Opened from: /Volumes/OS X El Capitan Update/OSXUpdCombo10.11.4.pkg
May 10 22:42:38 TonydeMac-Pro Installer[855]: Product archive /Volumes/OS X El Capitan Update/OSXUpdCombo10.11.4.pkg trustLevel=501
May 10 22:42:38 TonydeMac-Pro Installer[855]: IFDCC: padded OS update package with 1341440
May 10 22:42:38 TonydeMac-Pro Installer[855]: IFDCC: padded OS update package with 1341440
May 10 22:42:38 TonydeMac-Pro Installer[855]: IFDCC: padded OS update package with 1341440
May 10 22:42:38 TonydeMac-Pro Installer[855]: IFDCC: padded OS update package with 1341440
May 10 22:42:46 TonydeMac-Pro Installer[855]: InstallerStatusNotifications plugin loaded
May 10 22:42:47 TonydeMac-Pro Installer[855]: IFDCC: padded OS update package with 1341440
May 10 22:42:48 TonydeMac-Pro Installer[855]: LSExceptions [0x7f923bc1fd70] unloaded
May 10 22:42:54 TonydeMac-Pro Installer[855]: Administrator authorization granted.
May 10 22:42:54 TonydeMac-Pro Installer[855]: ================================================================================
May 10 22:42:54 TonydeMac-Pro Installer[855]: User picked Standard Install
May 10 22:42:54 TonydeMac-Pro Installer[855]: Choices selected for installation:
May 10 22:42:54 TonydeMac-Pro Installer[855]: 	安裝: "OS X El Capitan 更新"
May 10 22:42:54 TonydeMac-Pro Installer[855]: 	安裝: "OS X El Capitan 更新"
May 10 22:42:54 TonydeMac-Pro Installer[855]: 		OSXUpdCombo10.11.4.pkg#OSXUpdCombo10.11.4.pkg : OSXUpdCombo10.11.4 : 1.0.0.0.1.1457768702
May 10 22:42:54 TonydeMac-Pro Installer[855]: 		OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg : FirmwareUpdate : 1.0.0.0.1.1457768702
May 10 22:42:54 TonydeMac-Pro Installer[855]: ================================================================================
May 10 22:42:54 TonydeMac-Pro Installer[855]: It took 0.00 seconds to summarize the package selections.
May 10 22:42:54 TonydeMac-Pro Installer[855]: Ignoring post-logout for non-restart install
May 10 22:42:54 TonydeMac-Pro Installer[855]: -[IFDInstallController(Private) _buildInstallPlanReturningError:]: location = file://localhost
May 10 22:42:54 TonydeMac-Pro Installer[855]: -[IFDInstallController(Private) _buildInstallPlanReturningError:]: file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#OSXUpdCombo10.11.4.pkg
May 10 22:42:54 TonydeMac-Pro Installer[855]: -[IFDInstallController(Private) _buildInstallPlanReturningError:]: file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg
May 10 22:42:54 TonydeMac-Pro Installer[855]: Set authorization level to root for session
May 10 22:42:54 TonydeMac-Pro Installer[855]: Will use PK session
May 10 22:42:54 TonydeMac-Pro Installer[855]: Using authorization level of root for IFPKInstallElement
May 10 22:42:54 TonydeMac-Pro Installer[855]: Starting installation:
May 10 22:42:54 TonydeMac-Pro Installer[855]: Configuring volume "El Capitan"
May 10 22:42:54 TonydeMac-Pro Installer[855]: Preparing disk for local booted install.
May 10 22:42:54 TonydeMac-Pro Installer[855]: Free space on "El Capitan": 102.26 GB (102255034368 bytes).
May 10 22:42:54 TonydeMac-Pro Installer[855]: Create temporary directory "/var/folders/w7/m6yj9tk55656gg_tdln8_2nh0000gn/T//Install.8551bjqiB"
May 10 22:42:54 TonydeMac-Pro Installer[855]: IFPKInstallElement (2 packages)
May 10 22:43:00 TonydeMac-Pro system_installd[863]: installd: Starting
May 10 22:43:00 TonydeMac-Pro system_installd[863]: installd: uid=0, euid=0
May 10 22:43:00 TonydeMac-Pro system_installd[863]: PackageKit: Adding client PKInstallDaemonClient pid=855, uid=501 (/System/Library/CoreServices/Installer.app/Contents/MacOS/Installer)
May 10 22:43:00 TonydeMac-Pro Installer[855]: PackageKit: Enqueuing install with framework-specified quality of service (utility)
May 10 22:43:00 TonydeMac-Pro system_installd[863]: PackageKit: ----- Begin install -----
May 10 22:43:00 TonydeMac-Pro system_installd[863]: PackageKit: request=PKInstallRequest <2 packages, destination=/Volumes/El Capitan>
May 10 22:43:00 TonydeMac-Pro system_installd[863]: PackageKit: packages=(
	    "PKLeopardPackage <file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#OSXUpdCombo10.11.4.pkg>",
	    "PKLeopardPackage <file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg>"
	)
May 10 22:43:47 TonydeMac-Pro system_installd[863]: PackageKit: Extracting file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#OSXUpdCombo10.11.4.pkg (destination=/Volumes/El Capitan/.PKInstallSandboxManager-SystemSoftware/1E44E8A8-ECD0-47F4-96EA-2C163F882887.activeSandbox/Root, uid=0)
May 10 22:45:36 TonydeMac-Pro system_installd[863]: PackageKit: Install Failed: Error Domain=PKInstallErrorDomain Code=110 "從套件「OSXUpdCombo10.11.4.pkg」擷取檔案時發生錯誤。" UserInfo={NSUnderlyingError=0x7fb85fe05e10 {Error Domain=PKXARArchiveErrorDomain Code=101 "archive verify failed" UserInfo={NSURL=file:///Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg/Scripts, NSFileOwnerAccountID=0, NSFileHFSTypeCode=0, NSFileSystemFileNumber=355, NSFileExtensionHidden=false, NSFileSystemNumber=16777241, NSFileSize=1941833825, NSFileGroupOwnerAccountID=0, NSFileOwnerAccountName=root, NSFilePosixPermissions=420, NSFileHFSCreatorCode=0, NSFileCreationDate=2016-03-12 18:13:10 +0000, NSFileType=NSFileTypeRegular, NSFileGroupOwnerAccountName=wheel, NSFileReferenceCount=1, NSFileModificationDate=2016-03-12 18:15:57 +0000, NSLocalizedDescription=archive verify failed}}, NSURL=file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg, PKInstallPackageIdentifier=com.apple.update.firmwareupdate, NSLocalizedDescription=從套件「OSXUpdCombo10.11.4.pkg」擷取檔案時發生錯誤。} {
	    NSLocalizedDescription = "\U5f9e\U5957\U4ef6\U300cOSXUpdCombo10.11.4.pkg\U300d\U64f7\U53d6\U6a94\U6848\U6642\U767c\U751f\U932f\U8aa4\U3002";
	    NSURL = "file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg";
	    NSUnderlyingError = "Error Domain=PKXARArchiveErrorDomain Code=101 \"archive verify failed\" UserInfo={NSURL=file:///Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg/Scripts, NSFileOwnerAccountID=0, NSFileHFSTypeCode=0, NSFileSystemFileNumber=355, NSFileExtensionHidden=false, NSFileSystemNumber=16777241, NSFileSize=1941833825, NSFileGroupOwnerAccountID=0, NSFileOwnerAccountName=root, NSFilePosixPermissions=420, NSFileHFSCreatorCode=0, NSFileCreationDate=2016-03-12 18:13:10 +0000, NSFileType=NSFileTypeRegular, NSFileGroupOwnerAccountName=wheel, NSFileReferenceCou
May 10 22:45:36 TonydeMac-Pro system_installd[863]: PackageKit: Running idle tasks
May 10 22:45:36 TonydeMac-Pro system_installd[863]: PackageKit: Removing client PKInstallDaemonClient pid=855, uid=501 (/System/Library/CoreServices/Installer.app/Contents/MacOS/Installer)
May 10 22:45:36 TonydeMac-Pro Installer[855]: install:didFailWithError:Error Domain=PKInstallErrorDomain Code=110 "從套件「OSXUpdCombo10.11.4.pkg」擷取檔案時發生錯誤。" UserInfo={NSLocalizedDescription=從套件「OSXUpdCombo10.11.4.pkg」擷取檔案時發生錯誤。, NSURL=file://localhost/Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg, PKInstallPackageIdentifier=com.apple.update.firmwareupdate, NSUnderlyingError=0x7f923bd55660 {Error Domain=PKXARArchiveErrorDomain Code=101 "archive verify failed" UserInfo={NSURL=file:///Volumes/OS%20X%20El%20Capitan%20Update/OSXUpdCombo10.11.4.pkg#FirmwareUpdate.pkg/Scripts, NSFileOwnerAccountID=0, NSFileHFSTypeCode=0, NSFileSystemFileNumber=355, NSFileExtensionHidden=false, NSFileSystemNumber=16777241, NSFileSize=1941833825, NSFileGroupOwnerAccountID=0, NSFileOwnerAccountName=root, NSFilePosixPermissions=420, NSFileHFSCreatorCode=0, NSFileCreationDate=2016-03-12 18:13:10 +0000, NSFileType=NSFileTypeRegular, NSFileGroupOwnerAccountName=wheel, NSFileReferenceCount=1, NSFileModificationDate=2016-03-12 18:15:57 +0000, NSLocalizedDescription=archive verify failed}}}
May 10 22:45:37 TonydeMac-Pro Installer[855]: Install failed: 「安裝程式」遇到導致安裝失敗的錯誤。請聯絡軟體製造商來尋求協助。
May 10 22:45:37 TonydeMac-Pro Installer[855]: IFDInstallController 3BE21280 state = 8
May 10 22:45:37 TonydeMac-Pro Installer[855]: Displaying 'Install Failed' UI.
May 10 22:45:37 TonydeMac-Pro Installer[855]: 'Install Failed' UI displayed message:'「安裝程式」遇到導致安裝失敗的錯誤。請聯絡軟體製造商來尋求協助。'.
May 10 22:45:53 TonydeMac-Pro system_installd[863]: PackageKit: Done with sandbox removals
#1804
Have you tried booting it yet and checking if it has been updated? Looks like it failed on the Firmware Update which obviously won't do anything.
#1816
The fact that you have access to the El Capitan partition from Yosemite try installing the update from El Capitan its self and when you reboot after boot into Yosemite. Replace the kernel and run KCPM Utility to repair the caches.
#1894
Shanee, thanks for your advice. I booted into El Capitan and installed the update from App Store. After update, I booted into Yosemite and installed Encord and replace the Extra folder, install USB V3 again, ran KCPM Utility and it's all good now.

However, just wandering is it possible I clone the entire system by CCC to USB and boot from the USB drive in case I mess up El Capitan and had to install again later because it takes too many try to get the USB bootable drive to get the USB mouse to work when creating the bootable USB drive. I use your method to create the USB bootable drive but sometimes the mouse not working in installer.

If I could backup the entire system on USB drive, I don't have to repeat the step-by-step installation.
#1898
You could do yes. I have a Yosemite and El Capitan on external drives as backup both created using CCC.
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